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LouisK92
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Feb 23, 2026
| par_input_scrnaseq='resources_test/task_ist_preprocessing/mouse_brain_combined/scrnaseq_reference.h5ad' | ||
| par_sc_cell_type_key='cell_type' | ||
| par_output='resources_test/task_ist_preprocessing/mouse_brain_combined/transcript_assignments.zarr' | ||
| par_transcripts_key='transcripts' |
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The par_transcripts_key and par_coordinate_system are not used below since keys were hardcoded in the scripts. It's fine to hardcode them, so either take out the two arguments from the config yaml and here (recommended way) or make the scripts support them as arguments (wouldn't do)
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Describe your changes
Added the implementation of fastreseg
Potential issues: